Pure guess work on my part as most forum advice is. That right side plug looks fuel fouled to me. Skinny electrode and ground are fully black. Not firing every time. Explains the misfire.
Are you sure all the electrical components are talking to each other without excessive EMI or an intermittent short somewhere? Go over your grounds. The more the merrier with grounding and EI.
You could just have a bad plug. It happens.
I am compelled to say just run it some more as already suggested. The rings are a long way from bedded in with only 5 miles on a new motor.
My motor took a lot of miles to get the rings to bed in. They finally did after way more miles that I will list here.
If pump gas fuel was left in the bowls, two years is a long time, and the fuel will more than likely have evaporated and left a chalky residue that is a pain in the butt to clean out. You probably already addressed it, but just mentioning it.
I don't know what plugs you are running. But if not running the resistor caps and non-resistor plugs, you could try a slightly hotter resistor plug that I know works. You can take them out after you ensure the motor runs on both cylinders and have put a few mild miles on the engine. I use Autolite APP 3924 plugs. Small 5/8ths plug wrench plug. You can get the equivalent plug in a 13/16th wrench size, but I don't know what part the number is off the top of my head. The APP 3924 plugs are cheaper than what you are using and good for troubleshooting.
By the way, there should be some Norton members near you in Oregon. A second set of eyes on the prize might help.
Sorry about the babble, but you did ask for help. Be careful what you wish for.