Finally had the bike on the road today starting well and running on both pots, 200km trip around the back roads. :mrgreen: :mrgreen:
The misfire seems to have been due to one high tension lead being not quite perfect and the Altair has proved to be very sensitive to rotor alignment. Unlike some other ignitions the rotor is only located by the taper, there is no shoulder resting against the end of the cam so it is not hard to have it very slightly off square.
Part way through the process of sorting out the misfire the Alton starter slipped on the crankshaft, shearing the woodruff key. It seems that the starter relies on the friction between the rotor/sprag, the spacer and the front sprocket so the torquing of the nut on the crankshaft is crucial. Still not sure why it loosened (the nut was only finger tight after the slip and had been torqued correctly) but this time i will be retorqueing the nut once or twice after a few uses.