I think you have the right air jet. The air jet will mess with everything on a Mikuni.
Get a color tune spark plug and get your idle dialed in. From there, you can work on your needle and needle jet. Find the needle that works best for your application usually a 6DH3 or 6DH4. With the idle jet set based on the color tune spark plug start testing yoru plugs. Lean the needle out if you get the needle as low as it can go and it is still a black plug and the go from a P0 to an 08 needle jet.
I suspect your idle jet is a bit rich based on what you have listed. Color tune plug will let you know, and dont change things on a whim, pay attention to where the issue is happening throttle position, rpm, speed, etc.
I personally would get idle jets from 17.5 to 50 for a british bike, mains from 200 to 260, needles 6DH2, 6DH3, 6DH4, and 6F9, as well as O6 through P8 needle jets. It does not hurt to have a couple air jets as well, 1, 1.5, 2.0 and you may want to try a 3.0 slide. However, that is a lot of brass and a solid investment, but you can really dial in your carb and get a much more enjoyable riding experience by doing so.
There is some inconsistency here. He has the right air jet, but should have at hand a 1.0, 1.5, and 2.0?
Well, we know he has a 2.0. We should also know that the 2.0 is the standard fit to a new Mikuni. Personally, I would get a 0.9, 1.0 and 1.1.
Checking other threads on here will show that most find a sizing between 0.9 and 1.1 to work well on a 4 stroke. 2.0 is mostly suitable for 2 strokes. Some 2 stroke racers even run with no air jet fitted at all.....just the carb body hole.
I have Mikunis on 3 bikes, one is a 2 stroke, and it does indeed have a 2.0 fitted. The 4 strokes don't, one 750 twin set up, two 500 singles, one a race bike with a 38, the other a '56 plodder with a 32.
Change the air jet and it 'messes with everything'. Well, to a degree, yes it does. You certainly don't want to put a lot of effort into changing needle jets and main jets until you have it in the ball park on the air jet.
The problem being it is more a 'rate of change' adjustment than a fixed throttle opening adjustment. It doesn't really relate too throttle opening like the other jets, and it mostly affects higher rpm performance, the risk is you can suffer high rpm lean out if it is too large. This is why a lot of riders never really realise their air jet is wrong; they don't ride at high rpm than much of the time. Those inclined to run a single Mikuni on a Commando may never run in the range that would show a problem. Personally, I think this why vendors leave the 2.0 in. I find that lazy, but that's just my opinion.
The Australian member 'Fullauto' ran a long thread dealing with getting the air jet right on an 850 road bike, single 34mm. His reference was mostly Jim Comstock. They got there in the end and I think settled on 1.1.
I am currently running 36mms on my 750 short stroke, with I think a 0.7 or 0.8, with 34mms, it was a 1.1
And, I think the issue of black plugs and not getting a good response to the mixture setting is most likely too large a pilot jet......
And....if you can, get a copy of the Victory Manual for tuning VM Mikunis on British motorcycles.