John,
Having custom made my manifold for a Vm34 Mikuni and fitted several other "'off the shelf'" manifolds to Commandos, I can say there are potential difficulties with clearance around the rear frame junction and choice of appropriate airfilters and keeping adequate tuned inlet length.
Going to a Weber is a whole new exercise, and I think a bloody good idea. All the benefits of twin choke and none of the vices of the Concentrics. OK, let me say this in my defence from the purists - the Weber has immense tuning options and wears very little. The Amal doesn't.
I'd suggest working out the manifold dimesions and spatial fitment with modeling balsa wood from your local hobby store. It comes in convenient shapes and sizes and is easy to work with. Rough it out to fit and you've then got a pretty reliable reference to fabricate the real thing.
If you get it done, I sure we'd all like to hear how well it performs. And if its winner, I'm up for one as well....
Mick