Interesting discussion, thought would throw my 2 cents worth at it.
I am a long time Brit Bike fan, with 7 vintage Norton's in the shed plus over the years added some exotica, MV Agusta F4 Brutale (2), F3, Laverda Jota, Ducati Darmah so I have some good experience to call upon.
Last year I bought a Thruxton R, sight unseen on pre-order when they announced it Nov 2015. My first impression in May 2016 when I picked it up was I was blown away by so many attritbutes of this bike - the torque is amazing, propelling me out of corners in a flash, putting me too fast into the next ones... handling is great, smooth, quiet, uncomplicated and yes with the fairing in Silver is a handsome bike. I did a four day long ride and really had no complaints. It is a keeper.
Earlier this year I chanced upon a 2013 961 CR being sold at a good discount for the a lightly used bike with 1500mls on it. In black and gold it is stunning. In 2004 I had gone to the Seattle show to put a deposit on a Deer 952 Commando, he had the prototype there to look at, but my eye was focused on the MV Brutale, hot little Italian number in a skimpy red dress.... so now 13 years later the chance to own a 961 was real... done... On my first ride of the 961, I sort of wondered what did I do?, this is nothing like the Thruxton R, noticeably down on power, but suspension, brakes and handling very nice. The motor was making a lot of noise that made me feel like the bystanders on the street were pointing at the charf-cutter coming... it was pretty loud.
I have a full shop and working on bikes is a hobby. I contacted Richard-7 from this site, downloaded all the manuals, bought the split gear spring and few other goodies, replaced the plugs, the battery, oil in engine and oil in primary/gbox (20/50 Liqui Moly), it has really settled down and sounds like a true thoroughbred. Two weekends ago I joined our club run for a 400mile day ride, wondering how the 961 would work out. It has clip-ons that are higher than stock which is about the same position as the Thruxton R, so I had no issue on the ride. End of the day I was very happy to have taken the 961 - the noise is barely noticeable now, the handling in the twisties is precise, bumps are sucked up by the Ohlins, braking fantastic, seat comfortable (with a sheepskin). As far as quality, one can feel the difference. The 961 is really the true extension of my 850 Commando, it is raw, it is a brute and gorgeous, I am thinking "bovver boy" sort of untamed behaviour, big hairy legs and a set of boots.
If you want an no fuss commuter, the 961 is not for you. It will demand things from you in all areas, even just the little things like draining the airbox oil periodically helps one connect with the bike.. it is all part of the experience. So far this year: 961 1000mls, Thruxton R 80miles. Says it all